Research Tools

EPSCoR Research Server

The CI team maintains a research server to handle the data storage and computational needs of Missouri Transect researchers. Accounts on the server are available for all Missouri Transect participants.

Software List

Below is a list of software currently installed on the research server. If you need software that is not listed here, please contact the CI team about getting it installed.

Data Transfer

• Globus Connect Server

Computational Software / General Scientific Data / Image Processing

• MATLAB
• Matplotlib
• NetCDF with Ncview
• NumPy
• Python Imaging Library (PIL)
• R with RStudio
• SciPy
• UDUNITS

Genomics Analysis

• BamTools
• Bedtools
• BioPerl
• BLAST
• Bowtie
• Burrows-Wheeler Aligner
• Cufflinks
• FastQC
• FastqMcf
• FastX-Toolkit
• GATK
• GeneMerge
• HTSeq
• HTSlib
• Integrative Genomics Viewer (IGV)
• Platypus
• Samtools
• SolexaQA
• TopHat
• VCFtools

Weather Data Tools

• CSU Radar Tools
• Python-ARM Radar Toolkit (Py-ART)
• Radx
• Weather Research & Forecasting Model (WRF)