Plant Team

The Plant Team’s activities are directed toward understanding the correlations of plant genotypes and phenotypes with the environment and the impacts of changes in temperature and water availability on plant productivity. The team is achieving this goal by developing and using high-throughput phenotyping technologies, algorithms, and analytics that will associate genotypes and phenotypes with environmental variation.

The research addresses both above- and below-ground plant physiology and spans multiple scales of imaging and remote sensing, from close proximity imaging of plants at the single leaf, to medium-scale imaging of individual plants (in both the field and controlled environments), to large-scale remote imaging of plants and populations (field environments).

In collaboration with the Climate and Cyberinfrastructure Teams, the Plant Team will be integrating high-resolution, high-throughput phenotype and genotype (-omics) data with climate data to model varying environmental cues on plant productivity.

Research Aims

  1. Identify genes that confer drought tolerance and improve yields in crops.
  2. Develop and deploy imaging and remote-sensing technologies to understand plant response to environmental variation.
  3. Monitor plant health, growth and responses to the environment with remote optical sensing.
  4. Associate phenotypes with genotypes and environments and model plant productivity in changing environments.

Plant Team Lead

Dr. Todd Mockler
Dr. Todd Mockler is an Associate Member and Distinguished Investigator at the Donald Danforth Plant Science Center. Dr. Mockler has expertise in genomics, bioinformatics, gene regulatory mechanisms, and environmental responses in plants. His research group is a major developer of imaging and data analysis required for high-throughput image-based plant phenotyping. Dr. Mockler shares responsibility for the overall strategy and execution of the work proposed for the Donald Danforth Plant Science Center.

Plant Team Members

Ruthie Angelovici
Ruthie Angelovici is Assistant Professor of Biological Sciences at MU. She is a new faculty hire funded by Missouri Transect, beginning in Fall 2015. Her research is in the genetic and metabolic control of seed amino acids’ composition.
Clement Bagaza
Works with Ruthie Angelovici
Mikhail Berezin
Mikhail Berezin is Assistant Professor of Radiology at Washington University. He is an expert in optical spectroscopy and optical imaging of biological tissues. He is a member of the Plant Team and collaborates with the CI Teams.
Joel Burken
Joel Burken is Professor of Civil Architectural and Environmental Engineering at MST. He works on UAV-based imaging-both RGB and multispectral-on the Plant Team.
ZhiQiang Chen
Dr. ZhiQiang Chen is an Associate Professor in the UMKC School of Computing and Engineering. He is the PI on a seed grant funded by the Missouri Transect. His expertise are in soil-structure systems and multihazard life-cycle analysis, physical modeling and dynamic system identification, remote sensing and geoinformatics, digital imaging and machine vision for disaster scene understanding, crowdsourcing design for emergency response, and collaborative mobile-cloud computing.
Guilherme DeSouza
Gui DeSouza is Associate Professor of Electrical and Computer Engineering at MU and an expert in visual sensor networks and robotics. His lab designed and deployed ground robots in maize and soy fields in collaboration with Felix Fritschi's research group.
Lee Douangkeomany
Works with Chris Topp
Floro Floro Eric
Works with Chris Topp
Felix Fritschi
Felix Fritschi is Associate Professor in the Division of Plant Sciences at MU. His research focuses on field-based phenotyping of maize, development of phenotyping under field conditions using robotics, and physiological characterizations relevant to link plant responses to high-throughput methods of phenotyping. He is collaborating with Gui DeSouza on ground-platform imaging and with Jim Peterson on aerial-platform imaging.
Malia Gehan
Malia is a postdoctoral fellow at the Danforth Center in St. Louis. She works with Todd Mockler on the Track-1 Plant Team and facilitated the Summer 2015 Computer Science Institute for Women (CSIW) workshop at the Danforth Center. Along with Noah Fahlgren, she was awarded a Track-2 seed grant to do research on PlantCV, which will contribute to the field of plant phenotyping through imaging.
Michael Goerndt
Michael Goerndt is Assistant Professor in the Darr School of Agriculture at Missouri State University. He will use hyperspectral sensor and camera system installed on UAS equipment to develop and assess methodology for spatial modeling and monitoring of vegetative response to regional and localized fluctuations in climate and seasonality.
Aarati Juvekar
Aarati is a technician in the Mockler lab at the Danforth Center. She is working with Dr. Shakoor doing controlled-environment phenotyping on maize in the greenhouse and with the Lemnatec system.
Benjamin Laws
Works with Chris Topp
Robert Lowery
Works with Todd Mockler
Jacob Marsh
Works with Todd Mockler
Jonathan Naydenov
Works with Felix Fritschi
Jim Peterson
Jim Peterson is a technical expert in UAV piloting working at Missouri University of Science and Technology with Joel Burken on the Plant Team. His role is image collection using an Unmanned Aircraft Systems and will provide training for other Missouri Transect researchers and students working on UAV technology. He is Co-PI on the Missouri Transect seed grant led by Dr. Goerndt to monitor and model plant response to climate change using UAS technology.
Kaina Shahverdi
Works with Mikhail Berezin
Simone Silvestri
Simone Silvestri is Assistant Professor in the Department of Computer Science at MST. He received a Missouri Transect Seed Grant in August 2015. He will create a framework for UAV to increase accuracy while reducing operational costs.
Chris Topp
Chris Topp is an Assistant Member at the Danforth Center. His lab uses a phenomics approach to study crop root growth dynamics in response to environmental stress such as drought. He works closely with the Mockler Lab in root phenotyping in controlled environments.
Serena Winkleman
Works with Todd Mockler
Wasit Wulamu
Wasit Wulamu is Assistant Professor of Geographic Information Science in the Center for Sustainability at Saint Louis University. He received a Missouri Transect seed grant in August 2015 to develop new methods for monitoring crop growth and management using UAS technology.
Zhaozheng Yin
Zhaozheng Yin is an Assistant Professor in the Department of Computer Science at MST. He works on the robotic platform to capture image data on plants indoors and outdoors and image analysis algorithms to monitor the growth process of plants.
Xiong Zhang
Dr. Zhang is a new faculty hire at Missouri S&T. He is associate professor of civil, architectural and environmental engineering. Dr. Zhang’s research interests include remote sensing for geo-engineering applications, geothermal and ground source heat pump systems, soil stabilization and ground improvement, and frozen ground engineering.

Staff, Postdocs, and Students

Robert Alba
Works with Todd Mockler; expert in drought related plant genomics and is mainly advising on the project
Albert Batushansky
Tyler Bradford
Works with Dr. Goerndt
Adam Bray
Works in Chris Topp's lab
Carson Broeker
Works with Ruthie Angelovici
Sarah Dixon
Works with Felix Fritschi
Nathanael Ellis
Works in Chris Topp's lab
Liang Han
Liang is a Ph.D. student at MS&T doing research with Dr. Zhaozheng Yin on the Plant Team.
Sean Hartling
Sean Hartling is a PhD candidate in the Integrated Applied Sciences program (Environmental Sciences and GIS track) in the Center for Sustainability at Saint Louis University. He is working in the Wulamu lab on the Missouri Transect seed grant studying UAS technologies.
Suhas Kadam
Works with Felix Fritschi
Haohan Li
Haohan is a Ph.D. student at MS&T doing research with Dr. Zhaozheng Yin on the Plant Team.
Andrew Loehnig
Works with Felix Fritschi
Mason Maimaitijiang
Maitiniyazi Maimaitijiang is a MS student in Geographic Information Science program in the Center for Sustainability at Saint Louis University. He is working in the Wulamu lab on the Missouri Transect seed grant studying crop responses to climate change using field, UAS and satellite based remote sensing technologies.
Matthew Maimaitiyiming
Matthew Maimaitiyiming is a PhD candidate in the Integrated Applied Sciences program (Environmental Sciences and GIS track) in the Center for Sustainability at Saint Louis University. He is working in the Wulamu lab on the Missouri Transect seed grant studying UAS technologies.
Paul Manley
Paul is a Ph.D. student working with Joel Burken on the Plant Team at MS&T.
Michael Maw
Works with Felix Fritschi
Xin Miao
Xin Miao is Associate Professor in Geography Geology and Planning at MSU. He is Co-PI on the Missouri Transect seed grant led by Dr. Goerndt to monitor and model plant response to climate change using UAS technology.
Md Moniruzzaman
Works with Zhaozheng Yin
Santoshi Nerella
Works with ZhiQiang Chen
Kyle Peterson
Kyle Peterson is a MS student in Geographic Information Science program in the Center for Sustainability at Saint Louis University. He is working in the Wulamu lab on the Missouri Transect seed grant studying crop responses to climate change using field, UAS and satellite based remote sensing technologies.
Wenping Qiu
Wenping Qiu is Research Professor and Director of the Center for Grapevine Biotechnology at MSU. He is Co-PI on the Missouri Transect seed grant led by Dr. Goerndt to monitor and model plant response to climate change using UAS technology.
Edmond Rieffer
Works with Ruthie Angelovici
Ali Shafiekhani
Ali Shafiekhani is a PhD candidate in Electrical and Computer Engineering at MU. He works with Gui DeSouza on the Plant Team to design and operate the field-based robot.
Nadia Shakoor
Nadia Shakoor is a postdoctoral associate at the Danforth Center in the Mockler Lab. She is leading greenhouse phenotyping using the Lemnatec system.
Prativa Sharma
Works with ZhiQiang Chen
Ethan Shavers
Ethan Shavers is a PhD candidate in the Integrated Applied Sciences program (Environmental Sciences and GIS track) in the Center for Sustainability at Saint Louis University. He is working in the Wulamu lab on the Missouri Transect seed grant studying UAS technologies.
Rahul Sukharia
Works with Joel Burken
Shimin Tang
Works with ZhiQiang Chen
Abou Yobi
Haiying Zhou
Haiying Zhou is a postdoctoral scientist in the Berezin Lab at Washington University. She is using hyperspectral imaging to detect plant health in early stages of biotic and abiotic stresses.